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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_435469_445990_F

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
435469 - 445990
Intron Length:
10522

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGCGAAAG
5'SS Class:
major
3'SS Sequence:
TCTCCCCACACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
TTAACATGAACT
Flanking Amino Acid:
DAKNEKAVFTSDADCMVIDK
Intron Amino Acid Position:
866

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.4
0.65
1
67.9
39
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
71.2
0.48
0.8
65.2
29.5
Minor 5ss
26.3
-2.7
2.9
30.4
42.9
Minor BPS
60.4
0.4
1.8
80.64
40

Associated Gene:

Gene:
PPP6R2
Ensembl Gene ID:
ENSAPLG00000003046
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003179
381682 - 447727
66046