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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_43550649_43552544_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
43550649 - 43552544
Intron Length:
1896

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTTAC
5'SS Class:
strong_major
3'SS Sequence:
ATCACTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGTTAAT
U12 Branch Point Sequence:
TCATAGTTAATC
Flanking Amino Acid:
KVIRDRIEHIDWIPTTPEPM
Intron Amino Acid Position:
64

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.7
0.91
0.8
80.2
28.3
Major BPS
75.6
0.64
1.1
75.7
36.5
Major PPT
80.2
0.68
0.9
77
36.4
Minor 5ss
40.6
-1
2.8
49.4
41.4
Minor BPS
49.8
-0
2.2
63.88
41.9

Associated Gene:

Gene:
AGBL3
Ensembl Gene ID:
ENSAPLG00000003396
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003456
43549175 - 43556818
7644