About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_43552653_43555367_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
43552653 - 43555367
Intron Length:
2715

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGAACA
5'SS Class:
strong_major
3'SS Sequence:
CTCTTTCCACTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTCAA
U12 Branch Point Sequence:
ATTTGTTCAACT
Flanking Amino Acid:
KGTVVYLGEEANTASCFMYS
Intron Amino Acid Position:
100

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.9
0.89
0.8
79.5
28.2
Major BPS
75.6
0.64
1.1
77.7
37.1
Major PPT
72.5
0.51
0.8
67
34.1
Minor 5ss
28.3
-2.5
2.7
32.3
41.9
Minor BPS
60.9
0.42
2
82.49
39

Associated Gene:

Gene:
AGBL3
Ensembl Gene ID:
ENSAPLG00000003396
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003456
43549175 - 43556818
7644