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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_43555507_43556034_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
43555507 - 43556034
Intron Length:
528

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGT|GTAAGTTTA
5'SS Class:
major
3'SS Sequence:
TTTTGCCTATCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCACAA
U12 Branch Point Sequence:
TTTTGCCTATCA
Flanking Amino Acid:
ESGNLQKVVKVNDFEYQLTL
Intron Amino Acid Position:
146

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.6
0.63
1.1
77
34.4
Major BPS
59.7
0.24
1
67
29.8
Major PPT
80
0.68
0.9
78.9
34.4
Minor 5ss
45.8
-0.4
2.8
59
45.5
Minor BPS
51.5
0.04
2.3
76.04
41.3

Associated Gene:

Gene:
AGBL3
Ensembl Gene ID:
ENSAPLG00000003396
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003456
43549175 - 43556818
7644