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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_43576637_43580913_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
43576637 - 43580913
Intron Length:
4277

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCC|GTAAGTATC
5'SS Class:
major
3'SS Sequence:
CTCTGTTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTGAT
U12 Branch Point Sequence:
TTGCTGATGACA
Flanking Amino Acid:
MGSPVKQKLAGGL
Intron Amino Acid Position:
4

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.5
0.53
1.3
76.5
39.2
Major BPS
76.2
0.65
1.1
65.3
43.7
Major PPT
85.8
0.81
0.8
83.6
31.4
Minor 5ss
42.2
-0.9
2.8
59.5
38.1
Minor BPS
44.2
-0.4
2.2
60.17
39.8

Associated Gene:

Gene:
TMEM140
Ensembl Gene ID:
ENSAPLG00000022691
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023307
43576626 - 43583345
6720