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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_43581030_43581774_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
43581030 - 43581774
Intron Length:
745

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCTGTCTG
5'SS Class:
major
3'SS Sequence:
TGTTTTGCAGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCTCAT
U12 Branch Point Sequence:
ATGCACTAACCA
Flanking Amino Acid:
ARGAGRTATAGILTAAPTMV
Intron Amino Acid Position:
43

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.7
0.51
1.3
65.3
46
Major BPS
70
0.5
1.1
71.2
35.2
Major PPT
74.5
0.55
1
70.7
39.8
Minor 5ss
39.3
-1.2
2.8
50
46.3
Minor BPS
44.4
-0.4
2
56.07
42.8

Associated Gene:

Gene:
TMEM140
Ensembl Gene ID:
ENSAPLG00000022691
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023307
43576626 - 43583345
6720