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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_43587443_43587843_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
43587443 - 43587843
Intron Length:
401

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTCAG
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTATTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
GCCTCCTTAAAT
Flanking Amino Acid:
CSATGGVIFKLNGEDKVLES
Intron Amino Acid Position:
701

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.6
1.03
0.8
77.9
38.6
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
89.7
0.89
0.7
85.4
27.6
Minor 5ss
33.6
-1.9
2.9
40.4
45.7
Minor BPS
71.6
0.76
1.4
77.97
44

Associated Gene:

Gene:
WDR91
Ensembl Gene ID:
ENSAPLG00000002770
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002839
43587278 - 43603678
16401