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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_43588042_43588795_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
43588042 - 43588795
Intron Length:
754

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGCTGT
5'SS Class:
strong_major
3'SS Sequence:
TTTGTCATTCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATAAT
U12 Branch Point Sequence:
CTTATTATAATC
Flanking Amino Acid:
TVYSIGEDGKFIQWNIHKSG
Intron Amino Acid Position:
635

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.75
1
71.4
41.2
Major BPS
87.8
0.94
0.9
86.6
28.1
Major PPT
79
0.65
0.9
71.1
39.6
Minor 5ss
55.9
0.2
2.5
73.6
43
Minor BPS
51.3
0.02
1.6
62.99
37

Associated Gene:

Gene:
WDR91
Ensembl Gene ID:
ENSAPLG00000002770
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002839
43587278 - 43603678
16401