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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_43588909_43589728_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
43588909 - 43589728
Intron Length:
820

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTATGTTGG
5'SS Class:
major
3'SS Sequence:
GTTCTCCCCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTCTCAG
U12 Branch Point Sequence:
TGTCTCAGTACT
Flanking Amino Acid:
GAADGIVRLFDMQQHECAMS
Intron Amino Acid Position:
597

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.1
0.66
1
64.1
42.6
Major BPS
53.2
0.08
1.7
65.3
43.7
Major PPT
75.9
0.58
0.8
69.2
31.5
Minor 5ss
45.8
-0.4
2.5
55
44.5
Minor BPS
45.3
-0.2
2
68.26
41.6

Associated Gene:

Gene:
WDR91
Ensembl Gene ID:
ENSAPLG00000002770
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002839
43587278 - 43603678
16401