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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_4358952_4359767_F

Intron Information:

Intron Rank:
146327
Intron Class:
major
Intron Phase:
Intron Coordinates:
4358952 - 4359767
Intron Length:
816

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGATAC
5'SS Class:
strong_major
3'SS Sequence:
TCTTCTGCCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAA
U12 Branch Point Sequence:
AGCAAATTAAAA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.4
0.88
0.8
77.3
26.4
Major BPS
73.8
0.59
0.9
74
26.8
Major PPT
74.5
0.55
0.8
73.4
31.6
Minor 5ss
32.8
-2
3
40.8
45.7
Minor BPS
44.5
-0.4
1.8
51.48
38.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028842
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027782
4334097 - 4374392
40296
ENSAPLT00000023701
4335345 - 4364651
29307
ENSAPLT00000047573
4335345 - 4364651
29307