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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_43593152_43593546_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
43593152 - 43593546
Intron Length:
395

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACAGGC
5'SS Class:
major
3'SS Sequence:
TTTCTGCATGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CAGTCAT
U12 Branch Point Sequence:
TCTTTCTGCATG
Flanking Amino Acid:
GEHHSSIMYCRVDCSGRRVA
Intron Amino Acid Position:
422

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.7
0.61
1.2
64.2
40.9
Major BPS
64.7
0.37
1.2
67
39.8
Major PPT
79.2
0.66
0.9
74
35.7
Minor 5ss
36.3
-1.6
3.4
50.9
45.7
Minor BPS
48.8
-0.2
2
59.15
43.4

Associated Gene:

Gene:
WDR91
Ensembl Gene ID:
ENSAPLG00000002770
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002839
43587278 - 43603678
16401