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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_43596035_43596309_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
43596035 - 43596309
Intron Length:
275

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGATTCTC
5'SS Class:
strong_major
3'SS Sequence:
TCCTGCCTTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAATCAT
U12 Branch Point Sequence:
GCAAACATAACT
Flanking Amino Acid:
LGKKEPANHQSAKGKEGAVT
Intron Amino Acid Position:
303

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.2
0.74
0.9
74.1
36.4
Major BPS
71.6
0.54
1
72
33.1
Major PPT
78.5
0.64
0.8
69
37.1
Minor 5ss
33.4
-1.9
3
44.3
43.4
Minor BPS
48.6
-0
1.9
65
44.3

Associated Gene:

Gene:
WDR91
Ensembl Gene ID:
ENSAPLG00000002770
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002839
43587278 - 43603678
16401