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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_4359885_4363515_F

Intron Information:

Intron Rank:
146328
Intron Class:
major
Intron Phase:
Intron Coordinates:
4359885 - 4363515
Intron Length:
3631

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGCAAAGT
5'SS Class:
major
3'SS Sequence:
CAATCTTTGCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATAAC
U12 Branch Point Sequence:
CCTTCCCTAACC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.9
0.45
1
65
40.7
Major BPS
70.1
0.5
1
70.3
31.9
Major PPT
68.3
0.41
1.1
61.5
44
Minor 5ss
28
-2.5
3.2
40.5
45.3
Minor BPS
68.1
0.55
1.7
75.12
41.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028842
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047573
4335345 - 4364651
29307
ENSAPLT00000027782
4334097 - 4374392
40296
ENSAPLT00000023701
4335345 - 4364651
29307