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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_43599476_43600345_R

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
43599476 - 43600345
Intron Length:
870

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AGT|GCATGCATA
5'SS Class:
weak_major
3'SS Sequence:
CATTTCTCACCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTAACAT
U12 Branch Point Sequence:
TTTTCTTTAACA
Flanking Amino Acid:
LHNFLSVLFQLPVILNFEAE
Intron Amino Acid Position:
175

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
53
0.07
1.5
59.8
44.7
Major BPS
71
0.52
1.1
77.7
35.3
Major PPT
74.2
0.55
0.9
67.2
38.8
Minor 5ss
40.7
-1
4
57.4
47
Minor BPS
92.1
1.32
0.7
95.26
19.9

Associated Gene:

Gene:
WDR91
Ensembl Gene ID:
ENSAPLG00000002770
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002839
43587278 - 43603678
16401