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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_43600548_43601984_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
43600548 - 43601984
Intron Length:
1437

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGTGACC
5'SS Class:
major
3'SS Sequence:
TCCTGTGTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGAAGAT
U12 Branch Point Sequence:
TGTGAGTGAAGA
Flanking Amino Acid:
FRYYLVHTVQSGRNDKAQEF
Intron Amino Acid Position:
108

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.8
0.37
1.1
59.4
39.5
Major BPS
52.3
0.06
1.3
49.1
44.8
Major PPT
78.9
0.65
0.9
75.9
38
Minor 5ss
26.8
-2.7
3.2
34.7
41.4
Minor BPS
39.5
-0.8
2.4
53.78
44.3

Associated Gene:

Gene:
WDR91
Ensembl Gene ID:
ENSAPLG00000002770
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002839
43587278 - 43603678
16401