About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_43604147_43604286_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
43604147 - 43604286
Intron Length:
140

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGAGAT
5'SS Class:
strong_major
3'SS Sequence:
CCCTTCAAATTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TCCCCTTCAAAT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.2
0.71
0.9
72.9
31.2
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
60.4
0.24
0.9
60.1
34.3
Minor 5ss
26.8
-2.7
3.3
35
42.5
Minor BPS
51.2
0.11
1.7
66.71
43.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002652
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034471
43603858 - 43611022
7165