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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_43605607_43606003_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
43605607 - 43606003
Intron Length:
397

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGGCT
5'SS Class:
strong_major
3'SS Sequence:
GTGTTCTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAAGAAG
U12 Branch Point Sequence:
CTTTCTTTCCCT
Flanking Amino Acid:
EYVKGYFNNHSTASPSGAVS
Intron Amino Acid Position:
51

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.2
0.95
0.8
79.6
32.5
Major BPS
42.5
-0.4
1.7
50
42.2
Major PPT
83.7
0.76
0.9
81
36.6
Minor 5ss
31.9
-2.1
3.6
47.6
48
Minor BPS
44.9
-0.3
3.6
78.9
44

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002652
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034471
43603858 - 43611022
7165
ENSAPLT00000002667
43603858 - 43611022
7165