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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_43609108_43610438_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
43609108 - 43610438
Intron Length:
1331

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCCTGACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTGAC
U12 Branch Point Sequence:
TTTTCCCTGACA
Flanking Amino Acid:
SGSSVSTPEEVMFEDAFDVA
Intron Amino Acid Position:
123

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.3
0.86
0.9
81.6
29.9
Major BPS
78.7
0.71
0.9
69.3
37.7
Major PPT
80.4
0.68
0.9
76.9
31.9
Minor 5ss
37
-1.5
3.3
50.9
39.6
Minor BPS
75.8
0.81
1.6
87.79
29.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002652
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002666
43608742 - 43615863
7122
ENSAPLT00000034471
43603858 - 43611022
7165
ENSAPLT00000002667
43603858 - 43611022
7165