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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_43610516_43612283_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
43610516 - 43612283
Intron Length:
1768

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAATTAC
5'SS Class:
strong_major
3'SS Sequence:
GTTCCATTTCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAAACAT
U12 Branch Point Sequence:
TTAAACATAACT
Flanking Amino Acid:
TNETQGMSSQSSAFASCTSE
Intron Amino Acid Position:
148

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.88
0.9
80.8
27
Major BPS
63.2
0.33
1.1
69.6
35.7
Major PPT
75.2
0.57
0.9
66.5
39.7
Minor 5ss
39.8
-1.1
2.9
52
45.2
Minor BPS
58.8
0.35
1.9
80.43
40.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002652
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002666
43608742 - 43615863
7122