About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_43622193_43623338_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
43622193 - 43623338
Intron Length:
1146

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGATTT
5'SS Class:
strong_major
3'SS Sequence:
TTTGCTTTCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTTAC
U12 Branch Point Sequence:
TTTGCTTTCACA
Flanking Amino Acid:
LGFILDNTIPGTLEERGLLA
Intron Amino Acid Position:
535

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
0.9
81.6
33.2
Major BPS
72.7
0.56
0.9
63.4
35.2
Major PPT
84.6
0.78
0.8
79.7
32.4
Minor 5ss
42.5
-0.8
3.4
64.3
47.2
Minor BPS
65
0.46
1.8
78.6
38.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002381
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002388
43621924 - 43641422
19499
ENSAPLT00000029402
43621924 - 43638179
16256
ENSAPLT00000029074
43621924 - 43638179
16256