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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_43624451_43628256_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
43624451 - 43628256
Intron Length:
3806

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCCTT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCTGTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAGTAAT
U12 Branch Point Sequence:
ATGCATACAATT
Flanking Amino Acid:
ENVGALGITKYTDMNSSRNI
Intron Amino Acid Position:
444

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.2
0.85
0.9
77.8
38.7
Major BPS
76.6
0.66
1.1
75.9
36.3
Major PPT
84.5
0.78
0.8
80.7
31.3
Minor 5ss
38.4
-1.3
3.3
55.8
48.4
Minor BPS
42.4
-0.5
1.8
58.21
38.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002381
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029074
43621924 - 43638179
16256