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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_43633397_43636389_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
43633397 - 43636389
Intron Length:
2993

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGCCAA
5'SS Class:
major
3'SS Sequence:
GTTCTCCTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
CACTTGTCAACT
Flanking Amino Acid:
CTLLQVLFGVRLPIIQGGTF
Intron Amino Acid Position:
120

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.4
0.67
1.1
65
42.7
Major BPS
85
0.87
0.8
85.6
23
Major PPT
82.7
0.74
0.8
73.6
36.9
Minor 5ss
35.8
-1.6
3.3
46.5
48.8
Minor BPS
46.9
-0.1
2.2
64.43
46

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002381
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029402
43621924 - 43638179
16256
ENSAPLT00000029074
43621924 - 43638179
16256
ENSAPLT00000002388
43621924 - 43641422
19499