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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_43636548_43637882_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
43636548 - 43637882
Intron Length:
1335

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGTGACAG
5'SS Class:
major
3'SS Sequence:
CTGTGGCTCCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAC
U12 Branch Point Sequence:
TCCTTCTTCACC
Flanking Amino Acid:
WYLCILLGIQHFLTAMGGLV
Intron Amino Acid Position:
68

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.3
0.62
1
60.3
40.1
Major BPS
77.5
0.68
1
79.6
33
Major PPT
63.5
0.3
0.9
54.1
41.5
Minor 5ss
32
-2.1
3
37.9
47
Minor BPS
61.9
0.36
1.8
69.02
43.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002381
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029402
43621924 - 43638179
16256
ENSAPLT00000029074
43621924 - 43638179
16256
ENSAPLT00000002388
43621924 - 43641422
19499