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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_43681729_43682010_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
43681729 - 43682010
Intron Length:
282

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGACAA
5'SS Class:
strong_major
3'SS Sequence:
TCCTTGCCTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTCAT
U12 Branch Point Sequence:
CATGACCTAATT
Flanking Amino Acid:
SIGNGDSSQQITNSDTPSPP
Intron Amino Acid Position:
343

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.2
0.95
0.8
76.9
33.7
Major BPS
79.7
0.74
1
79.6
35.6
Major PPT
74.9
0.56
0.8
69.6
31.2
Minor 5ss
31.3
-2.1
3
38.6
46.4
Minor BPS
48.2
-0
2
66.73
43.9

Associated Gene:

Gene:
CNOT4
Ensembl Gene ID:
ENSAPLG00000016441
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017160
43663400 - 43703438
40039