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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_43684739_43687757_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
43684739 - 43687757
Intron Length:
3019

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACGATGC
5'SS Class:
strong_major
3'SS Sequence:
TGCCTTTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TTTTTTTTTACT
Flanking Amino Acid:
KNKNKVTALQRPNSNNKDAW
Intron Amino Acid Position:
271

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
1
67.1
39.7
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
83.9
0.76
0.8
76.1
37.8
Minor 5ss
37.2
-1.4
3.3
51
45.6
Minor BPS
74
0.84
1.5
91.27
31.8

Associated Gene:

Gene:
CNOT4
Ensembl Gene ID:
ENSAPLG00000016441
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017160
43663400 - 43703438
40039