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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_43692341_43692849_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
43692341 - 43692849
Intron Length:
509

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGCTG
5'SS Class:
strong_major
3'SS Sequence:
GTTTTCTTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAAAAAT
U12 Branch Point Sequence:
CTGTCTGGAAAA
Flanking Amino Acid:
NNSTSYAGSQGPSASAYVTY
Intron Amino Acid Position:
154

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
73.4
43.3
Major BPS
54
0.1
1
59.7
32.6
Major PPT
84.8
0.78
0.7
77.7
36.7
Minor 5ss
34.4
-1.8
3.4
46.7
48.6
Minor BPS
44.7
-0.4
2.1
56.86
42.7

Associated Gene:

Gene:
CNOT4
Ensembl Gene ID:
ENSAPLG00000016441
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017160
43663400 - 43703438
40039