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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_43692937_43695555_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
43692937 - 43695555
Intron Length:
2619

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCACT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCCAAT
U12 Branch Point Sequence:
ACTTCTATAACT
Flanking Amino Acid:
GLSQRLADPEVLKRPEYFGK
Intron Amino Acid Position:
125

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.8
80.5
33.9
Major BPS
71.8
0.54
1.2
79
32.5
Major PPT
91.3
0.93
0.6
88.5
21
Minor 5ss
36.6
-1.5
2.9
49.5
46.5
Minor BPS
69.2
0.68
1.6
83.17
37.9

Associated Gene:

Gene:
CNOT4
Ensembl Gene ID:
ENSAPLG00000016441
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017160
43663400 - 43703438
40039