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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_43775478_43775737_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
43775478 - 43775737
Intron Length:
260

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTATGTGCC
5'SS Class:
major
3'SS Sequence:
GTGTATTGCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
TTTTCCTTATGG
Flanking Amino Acid:
KQLDTYAPFPGKKHLEKAVQ
Intron Amino Acid Position:
838

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1
67.6
35.8
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
66.6
0.37
1.1
60.7
44.5
Minor 5ss
40.2
-1.1
3
50
41.8
Minor BPS
65.4
0.34
2
75.16
43

Associated Gene:

Gene:
NUP205
Ensembl Gene ID:
ENSAPLG00000016163
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029191
43751809 - 43800702
48894
ENSAPLT00000016922
43751809 - 43801391
49583