Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_43780333_43781270_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

43780333 - 43781270

Intron Length:

938

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTATGCAAC

5'SS Class:

strong_major

3'SS Sequence:

TTTTGATTTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTGAT

U12 Branch Point Sequence:

CTGTTTTTGATT

Flanking Amino Acid:

SPHLAELCYQVIYQLCACAD

Intron Amino Acid Position:

1066

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.5

0.77

36.6

Major BPS

96.4

1.15

0.6

85.7

34.9

Major PPT

0.85

0.8

85.4

34.1

Minor 5ss

45.8

-0.4

2.6

59.7

45.1

Minor BPS

63.5

0.51

1.2

73.17

Associated Gene:

Gene:

NUP205

Ensembl Gene ID:

ENSAPLG00000016163

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000029191

43751809 - 43800702

48894

ENSAPLT00000016922

43751809 - 43801391

49583