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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_43781386_43782402_F

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
43781386 - 43782402
Intron Length:
1017

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAACTTTT
5'SS Class:
strong_major
3'SS Sequence:
TATCTCCACGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATTTTCTTATCT
Flanking Amino Acid:
QLQYLPFSTREHEISTLNQM
Intron Amino Acid Position:
1104

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
1.1
87.9
29.3
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
72
0.49
0.9
66.6
34.2
Minor 5ss
55.9
0.2
2.5
76
39.7
Minor BPS
75.3
0.87
1.5
89.98
34

Associated Gene:

Gene:
NUP205
Ensembl Gene ID:
ENSAPLG00000016163
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029191
43751809 - 43800702
48894
ENSAPLT00000016922
43751809 - 43801391
49583