Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_43786123_43787797_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

43786123 - 43787797

Intron Length:

1675

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAATGCTC

5'SS Class:

major

3'SS Sequence:

CTTCTCTTTTAAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTCTT

U12 Branch Point Sequence:

TTCTCTTTTAAG

Flanking Amino Acid:

RDLLQDVHDKILDEDAAQEL

Intron Amino Acid Position:

1323

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

79.2

0.69

69.7

40.9

Major BPS

39.5

-0.6

4.3

85.7

34.9

Major PPT

78.4

0.64

82.7

26.3

Minor 5ss

35.4

-1.7

3.4

50.6

45.9

Minor BPS

55.8

0.04

1.9

64.24

43.6

Associated Gene:

Gene:

NUP205

Ensembl Gene ID:

ENSAPLG00000016163

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000029191

43751809 - 43800702

48894

ENSAPLT00000016922

43751809 - 43801391

49583