Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_43793194_43793998_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

43793194 - 43793998

Intron Length:

805

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTAGGAACT

5'SS Class:

major

3'SS Sequence:

TATCTTTTATCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATTTAAT

U12 Branch Point Sequence:

TATCTTTTATCA

Flanking Amino Acid:

TGIISKAALPGVLNELDVDI

Intron Amino Acid Position:

1689

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

75.4

0.6

70.8

39.2

Major BPS

90.7

1.01

0.7

19.9

Major PPT

81.9

0.72

0.9

81.9

34.1

Minor 5ss

34.9

-1.7

3.3

46.9

42.6

Minor BPS

59.3

0.29

1.5

69.44

36.8

Associated Gene:

Gene:

NUP205

Ensembl Gene ID:

ENSAPLG00000016163

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000029191

43751809 - 43800702

48894

ENSAPLT00000016922

43751809 - 43801391

49583