Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_43794076_43795631_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

43794076 - 43795631

Intron Length:

1556

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAATAAAG

5'SS Class:

strong_major

3'SS Sequence:

TTTTTCATGGCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTCAT

U12 Branch Point Sequence:

TTCTAATTAAAA

Flanking Amino Acid:

ELQGHIGRFQRQCLGLLSRF

Intron Amino Acid Position:

1715

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.1

0.73

73.5

37.1

Major BPS

100

1.24

0.5

100

Major PPT

80.7

0.69

78.2

34.9

Minor 5ss

32.9

-2

2.9

45.6

Minor BPS

55.9

0.18

1.9

71.18

40.3

Associated Gene:

Gene:

NUP205

Ensembl Gene ID:

ENSAPLG00000016163

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000029191

43751809 - 43800702

48894

ENSAPLT00000016922

43751809 - 43801391

49583