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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_43796429_43797144_F

Intron Information:

Intron Rank:
38
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
43796429 - 43797144
Intron Length:
716

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGATTT
5'SS Class:
strong_major
3'SS Sequence:
CATATTTTTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TTTTTTGTAACT
Flanking Amino Acid:
ETTNRDGPRQDTQAPVVPYW
Intron Amino Acid Position:
1800

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.7
86.7
23
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
77.5
0.62
0.9
69.6
41.2
Minor 5ss
38.4
-1.3
3.3
55.7
48.5
Minor BPS
69.1
0.68
2
90.89
33.1

Associated Gene:

Gene:
NUP205
Ensembl Gene ID:
ENSAPLG00000016163
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029191
43751809 - 43800702
48894
ENSAPLT00000016922
43751809 - 43801391
49583