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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_43799590_43801027_F

Intron Information:

Intron Rank:
42
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
43799590 - 43801027
Intron Length:
1438

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGATGT
5'SS Class:
strong_major
3'SS Sequence:
CTCTGTTTCTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGTAT
U12 Branch Point Sequence:
TTTACTGCAACA
Flanking Amino Acid:
NRVSQHDIDQLQIEATNSFG
Intron Amino Acid Position:
1965

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.8
77.6
33.4
Major BPS
71.5
0.53
1.4
71.7
44.6
Major PPT
81.4
0.71
0.8
79.5
32.5
Minor 5ss
34.2
-1.8
3.2
47.6
47.9
Minor BPS
50.1
-0
2.2
72.24
39.9

Associated Gene:

Gene:
NUP205
Ensembl Gene ID:
ENSAPLG00000016163
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016922
43751809 - 43801391
49583