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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_43802571_43804670_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
43802571 - 43804670
Intron Length:
2100

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAACGCTT
5'SS Class:
major
3'SS Sequence:
TTTTGTTTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
CTGTTCTGATTT
Flanking Amino Acid:
MGGFFSTIFSS
Intron Amino Acid Position:
2

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.7
0.42
1.2
64.3
47.1
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
88.5
0.87
0.7
84.9
29.9
Minor 5ss
41.8
-0.9
3.5
56.7
47.5
Minor BPS
50.3
0.09
1.7
67.76
43.8

Associated Gene:

Gene:
ARL1
Ensembl Gene ID:
ENSAPLG00000016092
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016792
43802567 - 43808382
5816