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Intron Name: Anas_platyrhynchos_platyrhynchos_1_43804809_43806171_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

43804809 - 43806171

Intron Length:

1363

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CGA|GTAAGTGAT

5'SS Class:

major

3'SS Sequence:

CACTTTCTTTCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

GTTTCAC

U12 Branch Point Sequence:

AATTGTTTCACT

Flanking Amino Acid:

QVGEVVTTIPTIGFNVETVT

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

77.4

0.65

75.1

35.1

Major BPS

72.3

0.55

1.2

77.4

37.4

Major PPT

83.2

0.75

0.8

80.5

31.1

Minor 5ss

35.6

-1.6

3.3

45.6

43.6

Minor BPS

52.2

0.15

2.2

75.1

41.9

Associated Gene:

Gene:

ARL1

Ensembl Gene ID:

ENSAPLG00000016092

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000048271

43804671 - 43808413

3743

ENSAPLT00000016792

43802567 - 43808382

5816