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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_43807082_43807818_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
43807082 - 43807818
Intron Length:
737

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
TCCCATTTCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCCCAT
U12 Branch Point Sequence:
ATCCCTTCAACA
Flanking Amino Acid:
SKSELVAMLEEEELKKAILV
Intron Amino Acid Position:
113

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.9
1.01
0.7
86
23.7
Major BPS
72.3
0.55
1.2
80.7
33.2
Major PPT
73.7
0.53
0.8
72.3
32
Minor 5ss
32.8
-2
2.9
39.7
45.8
Minor BPS
59.7
0.3
1.5
67.51
38.8

Associated Gene:

Gene:
ARL1
Ensembl Gene ID:
ENSAPLG00000016092
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048271
43804671 - 43808413
3743
ENSAPLT00000016792
43802567 - 43808382
5816