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Intron Name: Anas_platyrhynchos_platyrhynchos_1_43807998_43808351_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

43807998 - 43808351

Intron Length:

354

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTGAGTAAA

5'SS Class:

strong_major

3'SS Sequence:

CTCTTTTTCCTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATTTCAA

U12 Branch Point Sequence:

TTTTAGTAAACT

Flanking Amino Acid:

KGTGLDEAMEWLVEALKSRQ

Intron Amino Acid Position:

172

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.7

0.84

0.8

81.1

26.8

Major BPS

0.79

0.8

83.7

25.7

Major PPT

81.8

0.72

0.7

76.1

32.4

Minor 5ss

29.7

-2.3

2.6

30.1

36.9

Minor BPS

53.6

0.19

2.5

84.76

41.8

Associated Gene:

Gene:

ARL1

Ensembl Gene ID:

ENSAPLG00000016092

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000048271

43804671 - 43808413

3743

ENSAPLT00000016792

43802567 - 43808382

5816