About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_43809533_43810086_R

Intron Information:

Intron Rank:
61
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
43809533 - 43810086
Intron Length:
554

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTGTA
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTTCATTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACACAA
U12 Branch Point Sequence:
TTGTTTTTCATT
Flanking Amino Acid:
AMRKKQRALQTVANPDIAAR
Intron Amino Acid Position:
2751

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.5
1.12
0.6
90.6
20.3
Major BPS
51.9
0.05
0.9
59
27.3
Major PPT
78.1
0.63
0.9
79
34.3
Minor 5ss
36.3
-1.6
3.3
49
47.2
Minor BPS
60.5
0.41
1.7
78.42
39.1

Associated Gene:

Gene:
UTP20
Ensembl Gene ID:
ENSAPLG00000015651
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016392
43809377 - 43873776
64400