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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_43810233_43811788_R

Intron Information:

Intron Rank:
60
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
43810233 - 43811788
Intron Length:
1556

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCGAT
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTTTGTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTTAT
U12 Branch Point Sequence:
GCAAATTTATTT
Flanking Amino Acid:
RELNSTYAEQDPTLKNLSQE
Intron Amino Acid Position:
2702

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.95
0.8
81.4
32.7
Major BPS
79.9
0.74
0.9
69.7
37.1
Major PPT
79.4
0.66
0.9
81.2
36.5
Minor 5ss
38
-1.4
3.4
55
49.2
Minor BPS
44.9
-0.3
1.7
55.04
41

Associated Gene:

Gene:
UTP20
Ensembl Gene ID:
ENSAPLG00000015651
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016392
43809377 - 43873776
64400