About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_43811916_43812251_R

Intron Information:

Intron Rank:
59
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
43811916 - 43812251
Intron Length:
336

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAACA
5'SS Class:
strong_major
3'SS Sequence:
CGCTTACTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
ATACGCTTACTT
Flanking Amino Acid:
AAYSPKVPLKRSCIFKFLGA
Intron Amino Acid Position:
2660

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
0.99
0.8
83.4
27.8
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
77.3
0.61
0.9
73.4
36.1
Minor 5ss
33.8
-1.9
2.9
41.4
44.7
Minor BPS
48.9
-0
2
68.59
42.4

Associated Gene:

Gene:
UTP20
Ensembl Gene ID:
ENSAPLG00000015651
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016392
43809377 - 43873776
64400