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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_43814738_43816162_R

Intron Information:

Intron Rank:
55
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
43814738 - 43816162
Intron Length:
1425

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAAGTGAT
5'SS Class:
strong_major
3'SS Sequence:
CTGATTTTATTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTGAT
U12 Branch Point Sequence:
TCTTGCTGATTT
Flanking Amino Acid:
KEINPVQFEDITEEEEEKAA
Intron Amino Acid Position:
2434

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
1
83.5
27.9
Major BPS
76.2
0.65
1.1
65.3
43.7
Major PPT
70.5
0.46
1
70.4
39.9
Minor 5ss
36.8
-1.5
3.4
53.7
43.8
Minor BPS
49
0
2.1
72.32
45

Associated Gene:

Gene:
UTP20
Ensembl Gene ID:
ENSAPLG00000015651
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016392
43809377 - 43873776
64400