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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_43818517_43819239_R

Intron Information:

Intron Rank:
52
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
43818517 - 43819239
Intron Length:
723

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGA|GTAAGTTTA
5'SS Class:
major
3'SS Sequence:
CATTTCCTCACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTTAA
U12 Branch Point Sequence:
TAATTGTTAACC
Flanking Amino Acid:
PNLDFMLAQLDYEYETGRES
Intron Amino Acid Position:
2305

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.4
0.67
1
77.8
33.2
Major BPS
72.1
0.55
1.2
63.7
43.9
Major PPT
78.9
0.65
0.8
72.6
31.8
Minor 5ss
45
-0.5
2.8
54.7
43.6
Minor BPS
61
0.32
2
72.05
38.8

Associated Gene:

Gene:
UTP20
Ensembl Gene ID:
ENSAPLG00000015651
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016392
43809377 - 43873776
64400