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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_43820206_43820953_R

Intron Information:

Intron Rank:
50
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
43820206 - 43820953
Intron Length:
748

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTTCTG
5'SS Class:
major
3'SS Sequence:
GTCACATTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTACAT
U12 Branch Point Sequence:
ATTACATGAATC
Flanking Amino Acid:
RQATAFGLLKAILYRKLIVP
Intron Amino Acid Position:
2242

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.4
0.62
1
67.2
43.7
Major BPS
73.9
0.59
1
81
30.2
Major PPT
74.2
0.54
0.9
69.7
40.5
Minor 5ss
44
-0.7
2.8
58.7
45.8
Minor BPS
54.5
0.12
1.7
68.25
36.6

Associated Gene:

Gene:
UTP20
Ensembl Gene ID:
ENSAPLG00000015651
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016392
43809377 - 43873776
64400