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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_43821083_43821877_R

Intron Information:

Intron Rank:
49
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
43821083 - 43821877
Intron Length:
795

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTCAG
5'SS Class:
strong_major
3'SS Sequence:
TTTGATTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTGAT
U12 Branch Point Sequence:
TGTGTATTGACA
Flanking Amino Acid:
NFHLVVNCFKSVTILVKNAK
Intron Amino Acid Position:
2199

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.4
0.79
1
71.6
40.1
Major BPS
87.6
0.93
0.8
77.4
37.3
Major PPT
86.3
0.82
0.8
80.8
36.4
Minor 5ss
35.3
-1.7
2.9
41.6
39
Minor BPS
54.4
0.13
1.7
67.79
38.4

Associated Gene:

Gene:
UTP20
Ensembl Gene ID:
ENSAPLG00000015651
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016392
43809377 - 43873776
64400