Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_43822959_43823246_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

43822959 - 43823246

Intron Length:

288

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGG|GTAAGGATT

5'SS Class:

strong_major

3'SS Sequence:

TTTTCCGTGCCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GAGTCAC

U12 Branch Point Sequence:

ACTGTCTGAGAG

Flanking Amino Acid:

MLILVDSGLRLLHMSMKSSK

Intron Amino Acid Position:

2103

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.8

82.5

Major BPS

49.7

-0

1.3

55.1

42.1

Major PPT

75.6

0.58

69.5

41.6

Minor 5ss

37.8

-1.4

3.4

49.4

46.6

Minor BPS

42.1

-0.7

1.8

43.31

42.1

Associated Gene:

Gene:

UTP20

Ensembl Gene ID:

ENSAPLG00000015651

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000016392

43809377 - 43873776

64400