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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_43823389_43824276_R

Intron Information:

Intron Rank:
46
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
43823389 - 43824276
Intron Length:
888

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTTCC
5'SS Class:
strong_major
3'SS Sequence:
CACTGTTTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
GAAAACTGAATT
Flanking Amino Acid:
ENLPLLTEKAKTKVAPPPDP
Intron Amino Acid Position:
2055

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
0.9
78.6
29.6
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
79.5
0.66
0.9
76.2
37.5
Minor 5ss
43.2
-0.7
2.7
54.4
36.6
Minor BPS
48.6
-0
1.6
62.43
40.6

Associated Gene:

Gene:
UTP20
Ensembl Gene ID:
ENSAPLG00000015651
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016392
43809377 - 43873776
64400