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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_43824444_43825127_R

Intron Information:

Intron Rank:
45
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
43824444 - 43825127
Intron Length:
684

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
GCTGCCTTTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTCAT
U12 Branch Point Sequence:
CCCCTCGTGACT
Flanking Amino Acid:
VTKLILPLKEVLESTTKLKI
Intron Amino Acid Position:
2000

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.9
1.01
0.7
86
23.7
Major BPS
82.6
0.81
0.9
83.3
27.7
Major PPT
72.1
0.5
0.9
65.5
36.1
Minor 5ss
32.8
-2
2.9
39.7
45.8
Minor BPS
46
-0.2
2
59.24
44.7

Associated Gene:

Gene:
UTP20
Ensembl Gene ID:
ENSAPLG00000015651
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016392
43809377 - 43873776
64400