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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_43825296_43825813_R

Intron Information:

Intron Rank:
44
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
43825296 - 43825813
Intron Length:
518

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAAGCT
5'SS Class:
strong_major
3'SS Sequence:
CTGCTTTCCAAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTCAT
U12 Branch Point Sequence:
ATCTCATTGATT
Flanking Amino Acid:
LDPCLDILIEIFNQELFGDV
Intron Amino Acid Position:
1944

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
0.9
74.9
33.2
Major BPS
86.1
0.9
0.7
85.7
22.9
Major PPT
65.6
0.35
1
66.5
33.4
Minor 5ss
32.4
-2
3.5
48.3
47.4
Minor BPS
64
0.52
1.6
78.42
38

Associated Gene:

Gene:
UTP20
Ensembl Gene ID:
ENSAPLG00000015651
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016392
43809377 - 43873776
64400